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I'm not sure if the disabling of PulseAudio has anything to do with it. This version uses PortAudio, which can use either ALSA or Jack.
There is still a Jack-only version, I just noticed that I forgot to put them on the download page. They are there now.
Thanks. I just tried this version and received a segmentation fault when trying to launch it. This is on Ubuntu 16.04 LTS with Jackd2 on 64-bit architecture.
Brian
I think I found the cause of that. It tries to open the GUI, if that fails (for example if you are running it in an ssh shell, but for some reason it *can* also fail without a good reason) it should switch to non-GUI mode but i was calling 1 GUI function a bit later on which crashed. So I'm guessing that that's it. Can you try again? I have fixed it here locally (so it doesn't crash anymore) but if it;s that, trying a few times should get it running.